J4_6QNR_019

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6QNR|1|1H|G|1318, 6QNR|1|1H|A|1319, 6QNR|1|1H|U|1320, 6QNR|1|1H|G|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_019 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0576

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6QNR|1|1H|C|1317
6QNR|1|1H|G|1318
6QNR|1|1H|A|1319
6QNR|1|1H|U|1320
6QNR|1|1H|A|1321
6QNR|1|1H|A|1322
6QNR|1|1H|A|1323
*
6QNR|1|1H|U|1341
6QNR|1|1H|C|1342
*
6QNR|1|1H|G|1693
6QNR|1|1H|C|1694
6QNR|1|1H|G|1695
6QNR|1|1H|C|1696
*
6QNR|1|1H|G|2032
6QNR|1|1H|G|2033

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32