J4_6QNR_020

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6QNR|1|1H|U|1388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0611

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6QNR|1|1H|G|1357
6QNR|1|1H|G|1358
6QNR|1|1H|U|1359
6QNR|1|1H|U|1360
6QNR|1|1H|C|1361
*
6QNR|1|1H|G|1385
6QNR|1|1H|G|1386
6QNR|1|1H|U|1387
6QNR|1|1H|U|1388
6QNR|1|1H|A|1389
6QNR|1|1H|G|1390
*
6QNR|1|1H|C|1451
6QNR|1|1H|U|1452
*
6QNR|1|1H|A|1644
6QNR|1|1H|C|1645
6QNR|1|1H|C|1646
6QNR|1|1H|C|1647
6QNR|1|1H|G|1648
6QNR|1|1H|U|1649
6QNR|1|1H|A|1650
6QNR|1|1H|C|1651

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34