J4_6QNR_023

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNR_023 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0577

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6QNR|1|1H|G|1804
6QNR|1|1H|A|1805
6QNR|1|1H|C|1806
6QNR|1|1H|U|1807
6QNR|1|1H|G|1808
*
6QNR|1|1H|C|1820
6QNR|1|1H|A|1821
6QNR|1|1H|C|1822
6QNR|1|1H|A|1823
6QNR|1|1H|G|1824
*
6QNR|1|1H|C|1859
6QNR|1|1H|G|1860
6QNR|1|1H|A|1861
6QNR|1|1H|C|1862
*
6QNR|1|1H|G|1998
6QNR|1|1H|U|1999
6QNR|1|1H|A|2000
6QNR|1|1H|A|2001
6QNR|1|1H|C|2002

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA