J4_6QNR_024
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6QNR|1|1H|A|1994
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QNR_024 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0717
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6QNR|1|1H|U|1865
6QNR|1|1H|U|1866
6QNR|1|1H|G|1867
*
6QNR|1|1H|C|1928
6QNR|1|1H|G|1929
*
6QNR|1|1H|C|1947
6QNR|1|1H|C|1948
6QNR|1|1H|U|1949
6QNR|1|1H|A|1950
6QNR|1|1H|A|1951
6QNR|1|1H|G|1952
6QNR|1|1H|G|1953
6QNR|1|1H|U|1954
6QNR|1|1H|A|1955
6QNR|1|1H|G|1956
*
6QNR|1|1H|C|1990
6QNR|1|1H|G|1991
6QNR|1|1H|A|1992
6QNR|1|1H|A|1993
6QNR|1|1H|A|1994
6QNR|1|1H|A|1995
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2K
- Transfer RNA; tRNA
Coloring options: