J4_6QNR_034
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- A(4SU)AG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 6QNR|1|5K|G|46, 6QNR|1|5K|U|47
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QNR_034 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.4773
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6QNR|1|5K|A|7
6QNR|1|5K|4SU|8
6QNR|1|5K|A|9
6QNR|1|5K|G|10
*
6QNR|1|5K|C|25
6QNR|1|5K|A|26
6QNR|1|5K|G|27
6QNR|1|5K|G|28
*
6QNR|1|5K|C|42
6QNR|1|5K|C|43
6QNR|1|5K|G|44
6QNR|1|5K|U|45
6QNR|1|5K|G|46
6QNR|1|5K|U|47
6QNR|1|5K|C|48
6QNR|1|5K|C|49
*
6QNR|1|5K|G|65
6QNR|1|5K|U|66
Current chains
- Chain 5K
- E. coli tRNAPhe
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain A8
- 50S ribosomal protein L18
Coloring options: