J4_6QT0_006

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QT0_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0851

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

6QT0|1|A|G|2130
6QT0|1|A|A|2131
6QT0|1|A|C|2132
6QT0|1|A|U|2133
6QT0|1|A|G|2134
*
6QT0|1|A|C|2146
6QT0|1|A|A|2147
6QT0|1|A|U|2148
6QT0|1|A|A|2149
6QT0|1|A|G|2150
*
6QT0|1|A|U|2186
6QT0|1|A|G|2187
6QT0|1|A|A|2188
6QT0|1|A|U|2189
6QT0|1|A|U|2190
*
6QT0|1|A|A|2317
6QT0|1|A|U|2318
6QT0|1|A|U|2319
6QT0|1|A|A|2320
6QT0|1|A|A|2321
6QT0|1|A|C|2322

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain m

60S ribosomal protein L43-A