J4_6QTZ_002

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAUG*CGUC*GAG*CGUGUGG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QTZ|1|A|U|184
6QTZ|1|A|C|185
6QTZ|1|A|U|186
6QTZ|1|A|A|187
6QTZ|1|A|U|188
6QTZ|1|A|G|189
*
6QTZ|1|A|C|205
6QTZ|1|A|G|206
6QTZ|1|A|U|207
6QTZ|1|A|C|208
*
6QTZ|1|A|G|212
6QTZ|1|A|A|213
6QTZ|1|A|G|214
*
6QTZ|1|A|C|226
6QTZ|1|A|G|227
6QTZ|1|A|U|228
6QTZ|1|A|G|229
6QTZ|1|A|U|230
6QTZ|1|A|G|231
6QTZ|1|A|G|232

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain X

60S ribosomal protein L26-A

Chain y

5.8S ribosomal RNA; 5.8S rRNA