J4_6QTZ_007
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6QTZ|1|A|U|2269, 6QTZ|1|A|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QTZ_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2376
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6QTZ|1|A|C|2192
6QTZ|1|A|U|2193
6QTZ|1|A|G|2194
*
6QTZ|1|A|C|2248
6QTZ|1|A|G|2249
*
6QTZ|1|A|C|2267
6QTZ|1|A|U|2268
6QTZ|1|A|U|2269
6QTZ|1|A|A|2270
6QTZ|1|A|A|2271
6QTZ|1|A|G|2272
6QTZ|1|A|G|2273
6QTZ|1|A|U|2274
6QTZ|1|A|A|2275
6QTZ|1|A|G|2276
*
6QTZ|1|A|U|2310
6QTZ|1|A|G|2311
6QTZ|1|A|A|2312
6QTZ|1|A|A|2313
6QTZ|1|A|U|2314
6QTZ|1|A|G|2315
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L2-A
- Chain o
- Large subunit GTPase 1
- Chain w
- 60S ribosomal export protein NMD3
Coloring options: