J4_6QUL_004

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6QUL|1|A|G|1271, 6QUL|1|A|A|1272, 6QUL|1|A|U|1273, 6QUL|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QUL_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0953

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6QUL|1|A|C|1270
6QUL|1|A|G|1271
6QUL|1|A|A|1272
6QUL|1|A|U|1273
6QUL|1|A|A|1274
6QUL|1|A|A|1275
6QUL|1|A|A|1276
*
6QUL|1|A|U|1294
6QUL|1|A|C|1295
*
6QUL|1|A|G|1645
6QUL|1|A|C|1646
6QUL|1|A|U|1647
6QUL|1|A|U|1648
*
6QUL|1|A|A|2009
6QUL|1|A|G|2010

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32