J4_6QZP_004

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6QZP|1|L5|A|2366, 6QZP|1|L5|U|2369, 6QZP|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|OMC|2365
6QZP|1|L5|A|2366
6QZP|1|L5|A|2367
6QZP|1|L5|A|2368
6QZP|1|L5|U|2369
6QZP|1|L5|A|2370
6QZP|1|L5|U|2371
*
6QZP|1|L5|A|2389
6QZP|1|L5|G|2390
6QZP|1|L5|G|2391
*
6QZP|1|L5|C|2824
6QZP|1|L5|A|2825
6QZP|1|L5|U|2826
6QZP|1|L5|G|2827
6QZP|1|L5|U|2828
6QZP|1|L5|U|2829
*
6QZP|1|L5|A|3856
6QZP|1|L5|G|3857

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31