3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAAAUAU*AGG*CAUGUU*AG
Length
18 nucleotides
Bulged bases
6R5Q|1|5|A|2366, 6R5Q|1|5|U|2369, 6R5Q|1|5|U|2828
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6R5Q|1|5|C|2365
6R5Q|1|5|A|2366
6R5Q|1|5|A|2367
6R5Q|1|5|A|2368
6R5Q|1|5|U|2369
6R5Q|1|5|A|2370
6R5Q|1|5|U|2371
*
6R5Q|1|5|A|2389
6R5Q|1|5|G|2390
6R5Q|1|5|G|2391
*
6R5Q|1|5|C|2824
6R5Q|1|5|A|2825
6R5Q|1|5|U|2826
6R5Q|1|5|G|2827
6R5Q|1|5|U|2828
6R5Q|1|5|U|2829
*
6R5Q|1|5|A|3856
6R5Q|1|5|G|3857

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain P
uL22
Chain R
eL19
Chain d
eL31

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1823 s