J4_6R5Q_006

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6R5Q|1|5|A|2366, 6R5Q|1|5|U|2369, 6R5Q|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R5Q|1|5|C|2365
6R5Q|1|5|A|2366
6R5Q|1|5|A|2367
6R5Q|1|5|A|2368
6R5Q|1|5|U|2369
6R5Q|1|5|A|2370
6R5Q|1|5|U|2371
*
6R5Q|1|5|A|2389
6R5Q|1|5|G|2390
6R5Q|1|5|G|2391
*
6R5Q|1|5|C|2824
6R5Q|1|5|A|2825
6R5Q|1|5|U|2826
6R5Q|1|5|G|2827
6R5Q|1|5|U|2828
6R5Q|1|5|U|2829
*
6R5Q|1|5|A|3856
6R5Q|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31