J4_6R5Q_012

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

6R5Q|1|5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6R5Q_012 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.0866

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6R5Q|1|5|G|4587
6R5Q|1|5|U|4588
6R5Q|1|5|A|4589
6R5Q|1|5|A|4590
*
6R5Q|1|5|U|4620
6R5Q|1|5|C|4621
*
6R5Q|1|5|G|4676
6R5Q|1|5|U|4677
6R5Q|1|5|G|4678
*
6R5Q|1|5|C|4712
6R5Q|1|5|G|4713
6R5Q|1|5|C|4714
6R5Q|1|5|C|4715

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

eL14