J4_6R5Q_014
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6R5Q|1|K|A|672, 6R5Q|1|K|A|1083, 6R5Q|1|K|C|1085, 6R5Q|1|K|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R5Q_014 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0943
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6R5Q|1|K|A|671
6R5Q|1|K|A|672
6R5Q|1|K|G|673
*
6R5Q|1|K|C|1032
6R5Q|1|K|G|1033
6R5Q|1|K|A|1034
6R5Q|1|K|A|1035
6R5Q|1|K|A|1036
6R5Q|1|K|G|1037
*
6R5Q|1|K|C|1078
6R5Q|1|K|C|1079
6R5Q|1|K|A|1080
6R5Q|1|K|U|1081
6R5Q|1|K|A|1082
6R5Q|1|K|A|1083
6R5Q|1|K|A|1084
6R5Q|1|K|C|1085
6R5Q|1|K|G|1086
6R5Q|1|K|A|1087
6R5Q|1|K|U|1088
6R5Q|1|K|G|1089
*
6R5Q|1|K|U|1160
6R5Q|1|K|U|1161
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain EE
- Ribosomal protein S11
- Chain LL
- eS26
- Chain MM
- uS11
- Chain QQ
- ribosomal protein uS15
- Chain TT
- Ribosomal protein S15a
- Chain VV
- Ribosomal protein S23
- Chain n
- 60s ribosomal protein l41
- Chain p
- ribosomal protein eL43
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