3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
6R6G|1|5|C|303
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6R6G_003 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1477
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

6R6G|1|5|C|111
6R6G|1|5|C|112
*
6R6G|1|5|G|272
6R6G|1|5|A|273
6R6G|1|5|G|274
6R6G|1|5|U|275
6R6G|1|5|C|276
6R6G|1|5|G|277
*
6R6G|1|5|C|298
6R6G|1|5|A|299
6R6G|1|5|A|300
6R6G|1|5|A|301
6R6G|1|5|G|302
6R6G|1|5|C|303
6R6G|1|5|G|304
*
6R6G|1|5|U|321
6R6G|1|5|A|322
6R6G|1|5|A|323
6R6G|1|5|G|324

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain h
uL29
Chain i
60S ribosomal protein L36

Coloring options:


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