J4_6R6G_003
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 6R6G|1|5|C|303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R6G_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1477
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6R6G|1|5|C|111
6R6G|1|5|C|112
*
6R6G|1|5|G|272
6R6G|1|5|A|273
6R6G|1|5|G|274
6R6G|1|5|U|275
6R6G|1|5|C|276
6R6G|1|5|G|277
*
6R6G|1|5|C|298
6R6G|1|5|A|299
6R6G|1|5|A|300
6R6G|1|5|A|301
6R6G|1|5|G|302
6R6G|1|5|C|303
6R6G|1|5|G|304
*
6R6G|1|5|U|321
6R6G|1|5|A|322
6R6G|1|5|A|323
6R6G|1|5|G|324
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
- Chain i
- 60S ribosomal protein L36
Coloring options: