J4_6R6G_008

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6R6G|1|5|A|1759, 6R6G|1|5|U|1762, 6R6G|1|5|U|2221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|C|1758
6R6G|1|5|A|1759
6R6G|1|5|A|1760
6R6G|1|5|A|1761
6R6G|1|5|U|1762
6R6G|1|5|A|1763
6R6G|1|5|U|1764
*
6R6G|1|5|A|1782
6R6G|1|5|G|1783
6R6G|1|5|G|1784
*
6R6G|1|5|C|2217
6R6G|1|5|A|2218
6R6G|1|5|U|2219
6R6G|1|5|G|2220
6R6G|1|5|U|2221
6R6G|1|5|U|2222
*
6R6G|1|5|A|2554
6R6G|1|5|G|2555

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

60S ribosomal protein L19

Chain d

eL31