J4_6R6G_009
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6R6G|1|5|C|1830
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R6G_009 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1241
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|G|1799
6R6G|1|5|G|1800
6R6G|1|5|U|1801
6R6G|1|5|U|1802
6R6G|1|5|C|1803
*
6R6G|1|5|G|1827
6R6G|1|5|G|1828
6R6G|1|5|U|1829
6R6G|1|5|C|1830
6R6G|1|5|A|1831
6R6G|1|5|G|1832
*
6R6G|1|5|U|1931
6R6G|1|5|C|1932
*
6R6G|1|5|G|2170
6R6G|1|5|G|2171
6R6G|1|5|C|2172
6R6G|1|5|C|2173
6R6G|1|5|G|2174
6R6G|1|5|U|2175
6R6G|1|5|A|2176
6R6G|1|5|C|2177
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19
- Chain X
- uL23
- Chain g
- eL34
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
- Chain k
- 60S ribosomal protein L38
- Chain l
- eL39
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