J4_6R6G_011
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R6G_011 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.1124
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|G|2332
6R6G|1|5|A|2333
6R6G|1|5|C|2334
6R6G|1|5|U|2335
6R6G|1|5|G|2336
*
6R6G|1|5|C|2348
6R6G|1|5|A|2349
6R6G|1|5|A|2350
6R6G|1|5|A|2351
6R6G|1|5|G|2352
*
6R6G|1|5|U|2388
6R6G|1|5|G|2389
6R6G|1|5|A|2390
6R6G|1|5|U|2391
6R6G|1|5|U|2392
*
6R6G|1|5|A|2519
6R6G|1|5|U|2520
6R6G|1|5|G|2521
6R6G|1|5|A|2522
6R6G|1|5|A|2523
6R6G|1|5|C|2524
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 60s ribosomal protein l41
- Chain p
- ribosomal protein eL43
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