J4_6R6G_014
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 6R6G|1|5|U|3247
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R6G_014 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.1312
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|G|3157
6R6G|1|5|U|3158
6R6G|1|5|A|3159
6R6G|1|5|A|3160
*
6R6G|1|5|U|3190
6R6G|1|5|C|3191
*
6R6G|1|5|G|3246
6R6G|1|5|U|3247
6R6G|1|5|G|3248
*
6R6G|1|5|C|3282
6R6G|1|5|G|3283
6R6G|1|5|C|3284
6R6G|1|5|C|3285
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain O
- 60S ribosomal protein L13a
- Chain V
- eL14
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