J4_6R6G_016

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

6R6G|1|K|A|672, 6R6G|1|K|A|1083, 6R6G|1|K|C|1085, 6R6G|1|K|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6R6G_016 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.1011

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6R6G|1|K|A|671
6R6G|1|K|A|672
6R6G|1|K|G|673
*
6R6G|1|K|C|1032
6R6G|1|K|G|1033
6R6G|1|K|A|1034
6R6G|1|K|A|1035
6R6G|1|K|A|1036
6R6G|1|K|G|1037
*
6R6G|1|K|C|1078
6R6G|1|K|C|1079
6R6G|1|K|A|1080
6R6G|1|K|U|1081
6R6G|1|K|A|1082
6R6G|1|K|A|1083
6R6G|1|K|A|1084
6R6G|1|K|C|1085
6R6G|1|K|G|1086
6R6G|1|K|A|1087
6R6G|1|K|U|1088
6R6G|1|K|G|1089
*
6R6G|1|K|U|1160
6R6G|1|K|U|1161

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain EE

Ribosomal protein S11

Chain LL

40S ribosomal protein S26

Chain MM

40S ribosomal protein S14

Chain QQ

ribosomal protein uS15

Chain TT

Ribosomal protein S15a

Chain VV

Ribosomal protein S23

Chain n

60s ribosomal protein l41

Chain p

ribosomal protein eL43