J4_6R6P_015

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAG*CGU*AAGGUCCUU*AUCC

Length

20 nucleotides

Bulged bases

6R6P|1|2|U|8, 6R6P|1|2|A|44, 6R6P|1|2|U|47, 6R6P|1|2|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6R6P_015 not in the Motif Atlas

Homologous match to J4_7U2I_014

Geometric discrepancy: 0.3378

The information below is about J4_7U2I_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_47701.1

Basepair signature

cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6R6P|1|2|G|7
6R6P|1|2|U|8
6R6P|1|2|A|9
6R6P|1|2|G|10
*
6R6P|1|2|C|25
6R6P|1|2|G|26
6R6P|1|2|U|27
*
6R6P|1|2|A|43
6R6P|1|2|A|44
6R6P|1|2|G|45
6R6P|1|2|G|46
6R6P|1|2|U|47
6R6P|1|2|C|48
6R6P|1|2|C|49
6R6P|1|2|U|50
6R6P|1|2|U|51
*
6R6P|1|2|A|63
6R6P|1|2|U|64
6R6P|1|2|C|65
6R6P|1|2|C|66

Current chains

Chain 2

A/P-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain I

Ribosomal protein L10 (Predicted)