J4_6R7Q_007
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6R7Q|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R7Q_007 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0746
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R7Q|1|5|G|2406
6R7Q|1|5|G|2407
6R7Q|1|5|U|2408
6R7Q|1|5|U|2409
6R7Q|1|5|C|2410
*
6R7Q|1|5|G|2434
6R7Q|1|5|G|2435
6R7Q|1|5|U|2436
6R7Q|1|5|C|2437
6R7Q|1|5|A|2438
6R7Q|1|5|G|2439
*
6R7Q|1|5|U|2538
6R7Q|1|5|C|2539
*
6R7Q|1|5|G|2777
6R7Q|1|5|G|2778
6R7Q|1|5|C|2779
6R7Q|1|5|C|2780
6R7Q|1|5|G|2781
6R7Q|1|5|U|2782
6R7Q|1|5|A|2783
6R7Q|1|5|C|2784
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- eL19
- Chain X
- uL23
- Chain XX
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain g
- eL34
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
- Chain k
- eL38
- Chain l
- eL39
Coloring options: