J4_6R87_004
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6R87|1|1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R87_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0751
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6R87|1|1|G|1492
6R87|1|1|G|1493
6R87|1|1|U|1494
6R87|1|1|U|1495
6R87|1|1|C|1496
*
6R87|1|1|G|1520
6R87|1|1|G|1521
6R87|1|1|U|1522
6R87|1|1|U|1523
6R87|1|1|A|1524
6R87|1|1|G|1525
*
6R87|1|1|C|1614
6R87|1|1|C|1615
*
6R87|1|1|G|1829
6R87|1|1|G|1830
6R87|1|1|U|1831
6R87|1|1|C|1832
6R87|1|1|G|1833
6R87|1|1|U|1834
6R87|1|1|A|1835
6R87|1|1|C|1836
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L25
- Chain i
- 60S ribosomal protein L34-A
- Chain l
- 60S ribosomal protein L37-A
- Chain m
- 60S ribosomal protein L38
- Chain n
- 60S ribosomal protein L39
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