J4_6R87_006

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6R87_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0887

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

6R87|1|1|G|2130
6R87|1|1|A|2131
6R87|1|1|C|2132
6R87|1|1|U|2133
6R87|1|1|G|2134
*
6R87|1|1|C|2146
6R87|1|1|A|2147
6R87|1|1|U|2148
6R87|1|1|A|2149
6R87|1|1|G|2150
*
6R87|1|1|U|2186
6R87|1|1|G|2187
6R87|1|1|A|2188
6R87|1|1|U|2189
6R87|1|1|U|2190
*
6R87|1|1|A|2317
6R87|1|1|U|2318
6R87|1|1|U|2319
6R87|1|1|A|2320
6R87|1|1|A|2321
6R87|1|1|C|2322

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A