J4_6R87_010

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGG*CGC*GAGGUCU*AC

Length

16 nucleotides

Bulged bases

6R87|1|B|U|8, 6R87|1|B|U|47, 6R87|1|B|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6R87_010 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.2858

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6R87|1|B|G|7
6R87|1|B|U|8
6R87|1|B|G|9
6R87|1|B|G|10
*
6R87|1|B|C|25
6R87|1|B|G|26
6R87|1|B|C|27
*
6R87|1|B|G|43
6R87|1|B|A|44
6R87|1|B|G|45
6R87|1|B|G|46
6R87|1|B|U|47
6R87|1|B|C|48
6R87|1|B|U|49
*
6R87|1|B|A|65
6R87|1|B|C|66

Current chains

Chain B

tRNA-Ala

Nearby chains

Chain R

Protein VMS1,Vms1,Protein VMS1,Vms1