J4_6RBD_002
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6RBD|1|2|A|623, 6RBD|1|2|A|1026, 6RBD|1|2|C|1028, 6RBD|1|2|U|1029, 6RBD|1|2|A|1030, 6RBD|1|2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6RBD_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0913
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6RBD|1|2|A|622
6RBD|1|2|A|623
6RBD|1|2|G|624
*
6RBD|1|2|C|975
6RBD|1|2|G|976
6RBD|1|2|A|977
6RBD|1|2|A|978
6RBD|1|2|A|979
6RBD|1|2|G|980
*
6RBD|1|2|C|1021
6RBD|1|2|C|1022
6RBD|1|2|A|1023
6RBD|1|2|U|1024
6RBD|1|2|A|1025
6RBD|1|2|A|1026
6RBD|1|2|A|1027
6RBD|1|2|C|1028
6RBD|1|2|U|1029
6RBD|1|2|A|1030
6RBD|1|2|U|1031
6RBD|1|2|G|1032
*
6RBD|1|2|U|1103
6RBD|1|2|U|1104
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S11-A
- Chain N
- 40S ribosomal protein S13
- Chain O
- 40S ribosomal protein S14-A
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
- Chain y
- Dimethyladenosine transferase
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