3D structure

PDB id
6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
6RI5|1|A|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6RI5_004 not in the Motif Atlas
Homologous match to J4_8P9A_015
Geometric discrepancy: 0.0709
The information below is about J4_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6RI5|1|A|G|1492
6RI5|1|A|G|1493
6RI5|1|A|U|1494
6RI5|1|A|U|1495
6RI5|1|A|C|1496
*
6RI5|1|A|G|1520
6RI5|1|A|G|1521
6RI5|1|A|U|1522
6RI5|1|A|U|1523
6RI5|1|A|A|1524
6RI5|1|A|G|1525
*
6RI5|1|A|C|1614
6RI5|1|A|C|1615
*
6RI5|1|A|G|1829
6RI5|1|A|G|1830
6RI5|1|A|U|1831
6RI5|1|A|C|1832
6RI5|1|A|G|1833
6RI5|1|A|U|1834
6RI5|1|A|A|1835
6RI5|1|A|C|1836

Current chains

Chain A
25S RNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain W
60S ribosomal protein L25
Chain g
60S ribosomal protein L34-A
Chain i
60S ribosomal protein L37-A
Chain j
60S ribosomal protein L38
Chain k
60S ribosomal protein L39
Chain y
5.8S ribosomal RNA; 5.8S rRNA
Chain z
Cytoplasmic 60S subunit biogenesis factor REH1

Coloring options:


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