J4_6RI5_006

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6RI5_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0711

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

6RI5|1|A|G|2130
6RI5|1|A|A|2131
6RI5|1|A|C|2132
6RI5|1|A|U|2133
6RI5|1|A|G|2134
*
6RI5|1|A|C|2146
6RI5|1|A|A|2147
6RI5|1|A|U|2148
6RI5|1|A|A|2149
6RI5|1|A|G|2150
*
6RI5|1|A|U|2186
6RI5|1|A|G|2187
6RI5|1|A|A|2188
6RI5|1|A|U|2189
6RI5|1|A|U|2190
*
6RI5|1|A|A|2317
6RI5|1|A|U|2318
6RI5|1|A|U|2319
6RI5|1|A|A|2320
6RI5|1|A|A|2321
6RI5|1|A|C|2322

Current chains

Chain A

25S RNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain m

60S ribosomal protein L43-A