J4_6RI5_007
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6RI5|1|A|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6RI5_007 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2068
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6RI5|1|A|C|2192
6RI5|1|A|U|2193
6RI5|1|A|G|2194
*
6RI5|1|A|C|2248
6RI5|1|A|G|2249
*
6RI5|1|A|C|2267
6RI5|1|A|U|2268
6RI5|1|A|U|2269
6RI5|1|A|A|2270
6RI5|1|A|A|2271
6RI5|1|A|G|2272
6RI5|1|A|G|2273
6RI5|1|A|U|2274
6RI5|1|A|A|2275
6RI5|1|A|G|2276
*
6RI5|1|A|U|2310
6RI5|1|A|G|2311
6RI5|1|A|A|2312
6RI5|1|A|A|2313
6RI5|1|A|U|2314
6RI5|1|A|G|2315
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain B
- 60S ribosomal protein L2-A
- Chain o
- Large subunit GTPase 1
- Chain w
- 60S ribosomal export protein NMD3
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