J4_6RM3_001

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAAA*UAAG

Length

20 nucleotides

Bulged bases

6RM3|1|L50|A|325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6RM3_001 not in the Motif Atlas

Homologous match to J4_8C3A_001

Geometric discrepancy: 0.4812

The information below is about J4_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RM3|1|L50|C|191
6RM3|1|L50|C|192
*
6RM3|1|L50|G|293
6RM3|1|L50|A|294
6RM3|1|L50|G|295
6RM3|1|L50|U|296
6RM3|1|L50|A|297
6RM3|1|L50|G|298
*
6RM3|1|L50|U|319
6RM3|1|L50|G|320
6RM3|1|L50|A|321
6RM3|1|L50|A|322
6RM3|1|L50|U|323
6RM3|1|L50|A|324
6RM3|1|L50|A|325
6RM3|1|L50|A|326
*
6RM3|1|L50|U|343
6RM3|1|L50|A|344
6RM3|1|L50|A|345
6RM3|1|L50|G|346

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LHH

uL29

Chain LII

eL36

Chain LL0

eL13

Chain LN0

eL15