3D structure

PDB id
8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
8C3A|1|1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8C3A_001 not in the Motif Atlas
Homologous match to J4_5TBW_001
Geometric discrepancy: 0.2625
The information below is about J4_5TBW_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.4
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
6

Unit IDs

8C3A|1|1|U|111
8C3A|1|1|C|112
*
8C3A|1|1|G|267
8C3A|1|1|A|268
8C3A|1|1|G|269
8C3A|1|1|U|270
8C3A|1|1|C|271
8C3A|1|1|G|272
*
8C3A|1|1|C|293
8C3A|1|1|U|294
8C3A|1|1|A|295
8C3A|1|1|A|296
8C3A|1|1|G|297
8C3A|1|1|U|298
8C3A|1|1|G|299
*
8C3A|1|1|U|316
8C3A|1|1|A|317
8C3A|1|1|A|318
8C3A|1|1|A|319

Current chains

Chain 1
25S

Nearby chains

Chain AI
Ribosomal protein L29
Chain AJ
60S ribosomal protein L36
Chain t
60S ribosomal protein L13
Chain v
60S ribosomal protein L15-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.791 s