J4_6RM3_005

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AGCAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6RM3_005 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.2218

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

6RM3|1|L50|G|1513
6RM3|1|L50|A|1514
6RM3|1|L50|C|1515
6RM3|1|L50|U|1516
6RM3|1|L50|G|1517
*
6RM3|1|L50|C|1529
6RM3|1|L50|A|1530
6RM3|1|L50|U|1531
6RM3|1|L50|A|1532
6RM3|1|L50|G|1533
*
6RM3|1|L50|U|1554
6RM3|1|L50|G|1555
6RM3|1|L50|A|1556
6RM3|1|L50|A|1557
6RM3|1|L50|U|1558
*
6RM3|1|L50|A|1676
6RM3|1|L50|G|1677
6RM3|1|L50|C|1678
6RM3|1|L50|A|1679
6RM3|1|L50|A|1680
6RM3|1|L50|C|1681

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LPP

eL43

Chain S60

Small subunit ribosomal RNA; SSU rRNA