J4_6RZZ_003

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

6RZZ|1|A|A|1452, 6RZZ|1|A|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6RZZ_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.0824

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RZZ|1|A|C|1451
6RZZ|1|A|A|1452
6RZZ|1|A|A|1453
6RZZ|1|A|A|1454
6RZZ|1|A|U|1455
6RZZ|1|A|A|1456
6RZZ|1|A|U|1457
*
6RZZ|1|A|A|1475
6RZZ|1|A|G|1476
*
6RZZ|1|A|U|1877
6RZZ|1|A|G|1878
6RZZ|1|A|A|1879
6RZZ|1|A|U|1880
*
6RZZ|1|A|A|2352
6RZZ|1|A|G|2353

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A