3D structure

PDB id
8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
8C3A|1|1|A|1448, 8C3A|1|1|U|1451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8C3A_003 not in the Motif Atlas
Homologous match to J4_5TBW_003
Geometric discrepancy: 0.0916
The information below is about J4_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69568.1
Basepair signature
cWW-F-cWW-F-cWW-F-F-cWW
Number of instances in this motif group
1

Unit IDs

8C3A|1|1|C|1447
8C3A|1|1|A|1448
8C3A|1|1|A|1449
8C3A|1|1|A|1450
8C3A|1|1|U|1451
8C3A|1|1|A|1452
8C3A|1|1|U|1453
*
8C3A|1|1|A|1471
8C3A|1|1|G|1472
*
8C3A|1|1|U|1873
8C3A|1|1|G|1874
8C3A|1|1|A|1875
8C3A|1|1|U|1876
*
8C3A|1|1|A|2330
8C3A|1|1|G|2331

Current chains

Chain 1
25S

Nearby chains

Chain AE
60S ribosomal protein L31-B
Chain x
Ribosomal protein L22
Chain z
60S ribosomal protein L19-A

Coloring options:


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