J4_6RZZ_006

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6RZZ_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0591

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

6RZZ|1|A|G|2130
6RZZ|1|A|A|2131
6RZZ|1|A|C|2132
6RZZ|1|A|U|2133
6RZZ|1|A|G|2134
*
6RZZ|1|A|C|2146
6RZZ|1|A|A|2147
6RZZ|1|A|U|2148
6RZZ|1|A|A|2149
6RZZ|1|A|G|2150
*
6RZZ|1|A|U|2186
6RZZ|1|A|G|2187
6RZZ|1|A|A|2188
6RZZ|1|A|U|2189
6RZZ|1|A|U|2190
*
6RZZ|1|A|A|2317
6RZZ|1|A|U|2318
6RZZ|1|A|U|2319
6RZZ|1|A|A|2320
6RZZ|1|A|A|2321
6RZZ|1|A|C|2322

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain m

60S ribosomal protein L43-A