J4_6S05_002

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAUAUU*AAG*UGAU*AG

Length

17 nucleotides

Bulged bases

6S05|1|A|A|1452, 6S05|1|A|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|C|1451
6S05|1|A|A|1452
6S05|1|A|A|1453
6S05|1|A|A|1454
6S05|1|A|U|1455
6S05|1|A|A|1456
6S05|1|A|U|1457
6S05|1|A|U|1458
*
6S05|1|A|A|1474
6S05|1|A|A|1475
6S05|1|A|G|1476
*
6S05|1|A|U|1877
6S05|1|A|G|1878
6S05|1|A|A|1879
6S05|1|A|U|1880
*
6S05|1|A|A|2352
6S05|1|A|G|2353

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A