J4_6S05_005
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCAAAAUAGA*UUGGCU*AACUGGUACGGACAAGG*CAC
- Length
- 36 nucleotides
- Bulged bases
- 6S05|1|A|G|2111, 6S05|1|A|G|2116, 6S05|1|A|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S05|1|A|G|1906
6S05|1|A|C|1907
6S05|1|A|A|1908
6S05|1|A|A|1909
6S05|1|A|A|1910
6S05|1|A|A|1911
6S05|1|A|U|1912
6S05|1|A|A|1913
6S05|1|A|G|1914
6S05|1|A|A|1915
*
6S05|1|A|U|1937
6S05|1|A|U|1938
6S05|1|A|G|1939
6S05|1|A|G|1940
6S05|1|A|C|1941
6S05|1|A|U|1942
*
6S05|1|A|A|2106
6S05|1|A|A|2107
6S05|1|A|C|2108
6S05|1|A|U|2109
6S05|1|A|G|2110
6S05|1|A|G|2111
6S05|1|A|U|2112
6S05|1|A|A|2113
6S05|1|A|C|2114
6S05|1|A|G|2115
6S05|1|A|G|2116
6S05|1|A|A|2117
6S05|1|A|C|2118
6S05|1|A|A|2119
6S05|1|A|A|2120
6S05|1|A|G|2121
6S05|1|A|G|2122
*
6S05|1|A|C|2331
6S05|1|A|A|2332
6S05|1|A|C|2333
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain L
- 60S ribosomal protein L23-A
- Chain R
- 60S ribosomal protein L19-A
- Chain o
- Large subunit GTPase 1
- Chain v
- 60S ribosomal protein L24-A
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