J4_6S0K_001

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6S0K|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S0K_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.095

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6S0K|1|A|C|268
6S0K|1|A|C|269
*
6S0K|1|A|G|370
6S0K|1|A|A|371
6S0K|1|A|G|372
6S0K|1|A|U|373
6S0K|1|A|A|374
6S0K|1|A|G|375
*
6S0K|1|A|U|399
6S0K|1|A|G|400
6S0K|1|A|A|401
6S0K|1|A|A|402
6S0K|1|A|U|403
6S0K|1|A|A|404
6S0K|1|A|U|405
6S0K|1|A|G|406
*
6S0K|1|A|C|421
6S0K|1|A|A|422
6S0K|1|A|A|423
6S0K|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28