J4_6S0K_006
3D structure
- PDB id
- 6S0K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome nascent chain in complex with SecA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6S0K|1|A|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6S0K_006 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0692
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6S0K|1|A|U|1313
6S0K|1|A|C|1314
*
6S0K|1|A|G|1338
6S0K|1|A|G|1339
6S0K|1|A|U|1340
6S0K|1|A|G|1341
6S0K|1|A|A|1342
6S0K|1|A|G|1343
*
6S0K|1|A|C|1404
6S0K|1|A|U|1405
*
6S0K|1|A|A|1597
6S0K|1|A|A|1598
6S0K|1|A|U|1599
6S0K|1|A|C|1600
6S0K|1|A|G|1601
6S0K|1|A|U|1602
6S0K|1|A|A|1603
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain U
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
- Chain h
- Protein translocase subunit SecA
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