J4_6S0K_006

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6S0K|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S0K_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0692

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6S0K|1|A|U|1313
6S0K|1|A|C|1314
*
6S0K|1|A|G|1338
6S0K|1|A|G|1339
6S0K|1|A|U|1340
6S0K|1|A|G|1341
6S0K|1|A|A|1342
6S0K|1|A|G|1343
*
6S0K|1|A|C|1404
6S0K|1|A|U|1405
*
6S0K|1|A|A|1597
6S0K|1|A|A|1598
6S0K|1|A|U|1599
6S0K|1|A|C|1600
6S0K|1|A|G|1601
6S0K|1|A|U|1602
6S0K|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34

Chain h

Protein translocase subunit SecA