J4_6S0X_009

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

6S0X|1|a|C|120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0X|1|a|G|114
6S0X|1|a|A|115
6S0X|1|a|G|116
6S0X|1|a|U|117
6S0X|1|a|A|118
6S0X|1|a|A|119
6S0X|1|a|C|120
6S0X|1|a|A|121
6S0X|1|a|C|122
*
6S0X|1|a|G|246
6S0X|1|a|C|247
6S0X|1|a|U|248
*
6S0X|1|a|A|294
6S0X|1|a|U|295
6S0X|1|a|A|296
6S0X|1|a|G|297
*
6S0X|1|a|C|319
6S0X|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17