J4_6S0Z_009

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

6S0Z|1|A|A|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S0Z_009 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.5562

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6S0Z|1|A|G|2670
6S0Z|1|A|A|2671
6S0Z|1|A|G|2672
6S0Z|1|A|C|2673
*
6S0Z|1|A|G|2701
6S0Z|1|A|A|2702
6S0Z|1|A|C|2703
*
6S0Z|1|A|G|2758
6S0Z|1|A|G|2759
6S0Z|1|A|A|2760
6S0Z|1|A|C|2761
6S0Z|1|A|G|2762
*
6S0Z|1|A|C|2796
6S0Z|1|A|C|2797
6S0Z|1|A|C|2798

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain H

50S ribosomal protein L13

Chain I

50S ribosomal protein L14