J4_6S12_003

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S12_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4654

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6S12|1|A|C|644
6S12|1|A|A|645
6S12|1|A|A|646
6S12|1|A|G|647
*
6S12|1|A|C|669
6S12|1|A|G|670
6S12|1|A|U|671
6S12|1|A|A|672
6S12|1|A|G|673
*
6S12|1|A|C|680
6S12|1|A|G|681
6S12|1|A|A|682
6S12|1|A|G|683
*
6S12|1|A|C|695
6S12|1|A|G|696
6S12|1|A|U|697
6S12|1|A|U|698
6S12|1|A|U|699
6S12|1|A|A|700
6S12|1|A|G|701

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15