J4_6S12_004

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG*CC*GAGCG*CGG

Length

16 nucleotides

Bulged bases

6S12|1|A|G|1309, 6S12|1|A|A|1310, 6S12|1|A|A|1312, 6S12|1|A|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S12|1|A|C|1308
6S12|1|A|G|1309
6S12|1|A|A|1310
6S12|1|A|A|1311
6S12|1|A|A|1312
6S12|1|A|G|1313
*
6S12|1|A|C|1331
6S12|1|A|C|1332
*
6S12|1|A|G|1689
6S12|1|A|A|1690
6S12|1|A|G|1691
6S12|1|A|C|1692
6S12|1|A|G|1693
*
6S12|1|A|C|2035
6S12|1|A|G|2036
6S12|1|A|G|2037

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32