J4_6S12_005

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6S12|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S12|1|A|G|1347
6S12|1|A|U|1348
6S12|1|A|U|1349
6S12|1|A|U|1350
6S12|1|A|C|1351
*
6S12|1|A|G|1375
6S12|1|A|G|1376
6S12|1|A|U|1377
6S12|1|A|U|1378
6S12|1|A|A|1379
6S12|1|A|G|1380
*
6S12|1|A|C|1441
6S12|1|A|C|1442
*
6S12|1|A|G|1641
6S12|1|A|C|1642
6S12|1|A|C|1643
6S12|1|A|C|1644
6S12|1|A|G|1645
6S12|1|A|U|1646
6S12|1|A|A|1647
6S12|1|A|C|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain R

50S ribosomal protein L23