J4_6S12_008

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAGG*CUUGAC*GGG*CGG

Length

18 nucleotides

Bulged bases

6S12|1|A|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S12|1|A|C|2312
6S12|1|A|A|2313
6S12|1|A|A|2314
6S12|1|A|A|2315
6S12|1|A|G|2316
6S12|1|A|G|2317
*
6S12|1|A|C|2369
6S12|1|A|U|2370
6S12|1|A|U|2371
6S12|1|A|G|2372
6S12|1|A|A|2373
6S12|1|A|C|2374
*
6S12|1|A|G|2397
6S12|1|A|G|2398
6S12|1|A|G|2399
*
6S12|1|A|C|2408
6S12|1|A|G|2409
6S12|1|A|G|2410

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain M

50S ribosomal protein L18

Chain U

50S ribosomal protein L27