J4_6S13_013

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GAC*GAUAAUAUUUUGAA*UUCAAAAGUGAAAG*UCAC

Length

35 nucleotides

Bulged bases

6S13|1|a|U|183, 6S13|1|a|U|186, 6S13|1|a|U|188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|a|G|142
6S13|1|a|A|143
6S13|1|a|C|144
*
6S13|1|a|G|178
6S13|1|a|A|179
6S13|1|a|U|180
6S13|1|a|A|181
6S13|1|a|A|182
6S13|1|a|U|183
6S13|1|a|A|184
6S13|1|a|U|185
6S13|1|a|U|186
6S13|1|a|U|187
6S13|1|a|U|188
6S13|1|a|G|189
6S13|1|a|A|190
6S13|1|a|A|191
*
6S13|1|a|U|200
6S13|1|a|U|201
6S13|1|a|C|202
6S13|1|a|A|203
6S13|1|a|A|204
6S13|1|a|A|205
6S13|1|a|A|206
6S13|1|a|G|207
6S13|1|a|U|208
6S13|1|a|G|209
6S13|1|a|A|210
6S13|1|a|A|211
6S13|1|a|A|212
6S13|1|a|G|213
*
6S13|1|a|U|226
6S13|1|a|C|227
6S13|1|a|A|228
6S13|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20