3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
6S13|1|a|A|823, 6S13|1|a|C|825, 6S13|1|a|G|826, 6S13|1|a|A|827, 6S13|1|a|U|828
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6S13_014 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.4389
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6S13|1|a|G|583
6S13|1|a|C|584
6S13|1|a|G|585
*
6S13|1|a|C|772
6S13|1|a|G|773
6S13|1|a|A|774
6S13|1|a|A|775
6S13|1|a|A|776
6S13|1|a|G|777
*
6S13|1|a|C|818
6S13|1|a|C|819
6S13|1|a|G|820
6S13|1|a|U|821
6S13|1|a|A|822
6S13|1|a|A|823
6S13|1|a|A|824
6S13|1|a|C|825
6S13|1|a|G|826
6S13|1|a|A|827
6S13|1|a|U|828
6S13|1|a|G|829
*
6S13|1|a|C|888
6S13|1|a|C|889

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain q
30S ribosomal protein S17

Coloring options:


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