J4_6S13_015

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S13_015 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1419

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6S13|1|A|C|340
6S13|1|A|G|341
6S13|1|A|A|342
6S13|1|A|A|343
6S13|1|A|U|344
*
6S13|1|A|A|359
6S13|1|A|A|360
6S13|1|A|U|361
6S13|1|A|C|362
*
6S13|1|A|G|366
6S13|1|A|A|367
6S13|1|A|A|368
*
6S13|1|A|U|380
6S13|1|A|G|381
6S13|1|A|U|382
6S13|1|A|A|383
6S13|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L24