3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
CUGGC*GCGUGAGUGAUGAAGGUCUUCGGAUCGUAAAACUCUGUUAU*AUCAGAAAGCC*GCAAG
Length
62 nucleotides
Bulged bases
6S13|1|a|U|38, 6S13|1|a|G|39, 6S13|1|a|A|419, 6S13|1|a|U|420, 6S13|1|a|U|428, 6S13|1|a|U|429, 6S13|1|a|C|430
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6S13|1|a|C|37
6S13|1|a|U|38
6S13|1|a|G|39
6S13|1|a|G|40
6S13|1|a|C|41
*
6S13|1|a|G|410
6S13|1|a|C|411
6S13|1|a|G|412
6S13|1|a|U|413
6S13|1|a|G|414
6S13|1|a|A|415
6S13|1|a|G|416
6S13|1|a|U|417
6S13|1|a|G|418
6S13|1|a|A|419
6S13|1|a|U|420
6S13|1|a|G|421
6S13|1|a|A|422
6S13|1|a|A|423
6S13|1|a|G|424
6S13|1|a|G|425
6S13|1|a|U|426
6S13|1|a|C|427
6S13|1|a|U|428
6S13|1|a|U|429
6S13|1|a|C|430
6S13|1|a|G|431
6S13|1|a|G|432
6S13|1|a|A|433
6S13|1|a|U|434
6S13|1|a|C|435
6S13|1|a|G|436
6S13|1|a|U|437
6S13|1|a|A|438
6S13|1|a|A|439
6S13|1|a|A|440
6S13|1|a|A|441
6S13|1|a|C|442
6S13|1|a|U|443
6S13|1|a|C|444
6S13|1|a|U|445
6S13|1|a|G|446
6S13|1|a|U|447
6S13|1|a|U|448
6S13|1|a|A|449
6S13|1|a|U|450
*
6S13|1|a|A|500
6S13|1|a|U|501
6S13|1|a|C|502
6S13|1|a|A|503
6S13|1|a|G|504
6S13|1|a|A|505
6S13|1|a|A|506
6S13|1|a|A|507
6S13|1|a|G|508
6S13|1|a|C|509
6S13|1|a|C|510
*
6S13|1|a|G|552
6S13|1|a|C|553
6S13|1|a|A|554
6S13|1|a|A|555
6S13|1|a|G|556

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12

Coloring options:

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