J4_6S13_016
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- CUGGC*GCGUGAGUGAUGAAGGUCUUCGGAUCGUAAAACUCUGUUAU*AUCAGAAAGCC*GCAAG
- Length
- 62 nucleotides
- Bulged bases
- 6S13|1|a|U|38, 6S13|1|a|G|39, 6S13|1|a|A|419, 6S13|1|a|U|420, 6S13|1|a|U|428, 6S13|1|a|U|429, 6S13|1|a|C|430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S13|1|a|C|37
6S13|1|a|U|38
6S13|1|a|G|39
6S13|1|a|G|40
6S13|1|a|C|41
*
6S13|1|a|G|410
6S13|1|a|C|411
6S13|1|a|G|412
6S13|1|a|U|413
6S13|1|a|G|414
6S13|1|a|A|415
6S13|1|a|G|416
6S13|1|a|U|417
6S13|1|a|G|418
6S13|1|a|A|419
6S13|1|a|U|420
6S13|1|a|G|421
6S13|1|a|A|422
6S13|1|a|A|423
6S13|1|a|G|424
6S13|1|a|G|425
6S13|1|a|U|426
6S13|1|a|C|427
6S13|1|a|U|428
6S13|1|a|U|429
6S13|1|a|C|430
6S13|1|a|G|431
6S13|1|a|G|432
6S13|1|a|A|433
6S13|1|a|U|434
6S13|1|a|C|435
6S13|1|a|G|436
6S13|1|a|U|437
6S13|1|a|A|438
6S13|1|a|A|439
6S13|1|a|A|440
6S13|1|a|A|441
6S13|1|a|C|442
6S13|1|a|U|443
6S13|1|a|C|444
6S13|1|a|U|445
6S13|1|a|G|446
6S13|1|a|U|447
6S13|1|a|U|448
6S13|1|a|A|449
6S13|1|a|U|450
*
6S13|1|a|A|500
6S13|1|a|U|501
6S13|1|a|C|502
6S13|1|a|A|503
6S13|1|a|G|504
6S13|1|a|A|505
6S13|1|a|A|506
6S13|1|a|A|507
6S13|1|a|G|508
6S13|1|a|C|509
6S13|1|a|C|510
*
6S13|1|a|G|552
6S13|1|a|C|553
6S13|1|a|A|554
6S13|1|a|A|555
6S13|1|a|G|556
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: