Loop J4_6S13

3D structure

PDB id: 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.58 Å

Loop

Sequence: CUGGC*GCGUGAGUGAUGAAGGUCUUCGGAUCGUAAAACUCUGUUAU*AUCAGAAAGCC*GCAAG
Length: 62 nucleotides
Bulged bases: 6S13|1|a|U|38, 6S13|1|a|G|39, 6S13|1|a|A|419, 6S13|1|a|U|420, 6S13|1|a|U|428, 6S13|1|a|U|429, 6S13|1|a|C|430
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6S13|1|a|C|37
6S13|1|a|U|38
6S13|1|a|G|39
6S13|1|a|G|40
6S13|1|a|C|41
*
6S13|1|a|G|410
6S13|1|a|C|411
6S13|1|a|G|412
6S13|1|a|U|413
6S13|1|a|G|414
6S13|1|a|A|415
6S13|1|a|G|416
6S13|1|a|U|417
6S13|1|a|G|418
6S13|1|a|A|419
6S13|1|a|U|420
6S13|1|a|G|421
6S13|1|a|A|422
6S13|1|a|A|423
6S13|1|a|G|424
6S13|1|a|G|425
6S13|1|a|U|426
6S13|1|a|C|427
6S13|1|a|U|428
6S13|1|a|U|429
6S13|1|a|C|430
6S13|1|a|G|431
6S13|1|a|G|432
6S13|1|a|A|433
6S13|1|a|U|434
6S13|1|a|C|435
6S13|1|a|G|436
6S13|1|a|U|437
6S13|1|a|A|438
6S13|1|a|A|439
6S13|1|a|A|440
6S13|1|a|A|441
6S13|1|a|C|442
6S13|1|a|U|443
6S13|1|a|C|444
6S13|1|a|U|445
6S13|1|a|G|446
6S13|1|a|U|447
6S13|1|a|U|448
6S13|1|a|A|449
6S13|1|a|U|450
*
6S13|1|a|A|500
6S13|1|a|U|501
6S13|1|a|C|502
6S13|1|a|A|503
6S13|1|a|G|504
6S13|1|a|A|505
6S13|1|a|A|506
6S13|1|a|A|507
6S13|1|a|G|508
6S13|1|a|C|509
6S13|1|a|C|510
*
6S13|1|a|G|552
6S13|1|a|C|553
6S13|1|a|A|554
6S13|1|a|A|555
6S13|1|a|G|556

Current chains

Chain a: 16S ribosomal RNA

Nearby chains

Chain c: 30S ribosomal protein S3
Chain d: 30S ribosomal protein S4
Chain l: 30S ribosomal protein S12

J4_6S13_016