J4_6S47_002

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S47_002 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.0939

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6S47|1|AA|C|185
6S47|1|AA|U|186
6S47|1|AA|A|187
6S47|1|AA|U|188
6S47|1|AA|G|189
*
6S47|1|AA|C|205
6S47|1|AA|G|206
6S47|1|AA|U|207
6S47|1|AA|C|208
*
6S47|1|AA|G|212
6S47|1|AA|A|213
6S47|1|AA|G|214
*
6S47|1|AA|C|226
6S47|1|AA|G|227
6S47|1|AA|U|228
6S47|1|AA|G|229
6S47|1|AA|U|230
6S47|1|AA|G|231

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

60S ribosomal protein L4-A

Chain Aa

60S ribosomal protein L26-A