J4_6S47_003

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

6S47|1|AA|A|1452, 6S47|1|AA|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S47_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.0746

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|AA|C|1451
6S47|1|AA|A|1452
6S47|1|AA|A|1453
6S47|1|AA|A|1454
6S47|1|AA|U|1455
6S47|1|AA|A|1456
6S47|1|AA|U|1457
*
6S47|1|AA|A|1475
6S47|1|AA|G|1476
*
6S47|1|AA|U|1877
6S47|1|AA|G|1878
6S47|1|AA|A|1879
6S47|1|AA|U|1880
*
6S47|1|AA|A|2352
6S47|1|AA|G|2353

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L17-A

Chain AT

60S ribosomal protein L19-A

Chain Af

60S ribosomal protein L31-A